Separate tracked source from generated artifacts so the repo root stops accumulating helper scripts, manifests, and local runtime outputs.
Move manual shell entrypoints under scripts/, manifests under config/, and the Firecracker API reference under docs/reference/. Make build and runtimebundle now target build/bin, build/runtime, and build/dist as the canonical source-checkout paths.
Update runtime discovery, helper scripts, tests, and docs to follow the new layout while keeping legacy source-checkout runtime fallbacks for existing local bundles during migration.
Validated with bash -n on the moved scripts, make build, and GOCACHE=/tmp/banger-gocache go test ./....
Move the default guest package list into a repo manifest and record a hash beside built rootfs images so run/make-rootfs can warn when the docker-ready image is stale.
Switch the Firecracker launch path to a single sparse root overlay per VM instead of separate /home and /var disks, so many VMs can share the same base image while still installing packages under /var and working from /root.
Keep older images bootable by masking stale home.mount and var.mount units at boot, and scrub those obsolete fstab entries when customize.sh rebuilds an image. Verified with bash -n on the updated scripts; no live VM boot was run in this environment.
